TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= query SelS_C.intestinalis.fa
         (204 letters)

Database: C.muris/genome.fa 
           84 sequences; 9,245,251 total letters

Searching...................................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|DS989735.1| Cryptosporidium muris RN66 scf_1106632353989 geno...    32   0.073
gb|DS989733.1| Cryptosporidium muris RN66 scf_1106632373425 geno...    31   0.16 
gb|DS989726.1| Cryptosporidium muris RN66 scf_1106632373453 geno...    28   1.4  
gb|DS989731.1| Cryptosporidium muris RN66 scf_1106632373451 geno...    28   1.8  
gb|DS989736.1| Cryptosporidium muris RN66 scf_1106632373433 geno...    27   4.0  
gb|DS989741.1| Cryptosporidium muris RN66 scf_1106632373429 geno...    26   5.3  

>gb|DS989735.1| Cryptosporidium muris RN66 scf_1106632353989 genomic scaffold, whole
             genome shotgun sequence
          Length = 378465

 Score = 32.3 bits (72), Expect = 0.073
 Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
 Frame = +1

Query: 72    FGRRKTYYDDTENMTPEQVEARSVAMERARKKLQDRHDAAAREHEERLREQEEQKRMQKI 131
             F RRK   +DT ++  E  E  S   E + ++ ++ +     ++EE    + ++   ++ 
Sbjct: 48196 FTRRKVLIEDTRSLDSESEE--STDNETSEQEYEEEYQ---EDYEEEYEGEYQEDYEEEY 48360

Query: 132   NDHDALKAGK-TQSKTSKKLDQKPD 155
              D D  K G+ T+ KTS K D   D
Sbjct: 48361 QDKDKEKQGEFTERKTSNKGDDSLD 48435


>gb|DS989733.1| Cryptosporidium muris RN66 scf_1106632373425 genomic scaffold, whole
              genome shotgun sequence
          Length = 528544

 Score = 31.2 bits (69), Expect = 0.16
 Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
 Frame = -3

Query: 76     KTYYDDTENMTPEQVEARSVAMERARKKLQDRHDAAAREHEERLREQE-EQKRMQKINDH 134
              +  Y DT +      E R+V         QDR +    + +E+ +EQE EQ++ QK    
Sbjct: 273947 RNLYTDTNSTLETSEENRTV---------QDREEQEQEQEQEQEQEQEQEQEQKQKQKQK 273795

Query: 135    DALKAGKTQSKTSKKLDQKPDPN 157
                 K  +  S  S  LD    PN
Sbjct: 273794 QKQKRSQIDSSISDDLDILDFPN 273726


>gb|DS989726.1| Cryptosporidium muris RN66 scf_1106632373453 genomic scaffold, whole
              genome shotgun sequence
          Length = 1324930

 Score = 28.1 bits (61), Expect = 1.4
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +3

Query: 80     DDTENMTPEQVEARSVAMERARKKLQDRHDAAAREHEERLREQEEQKRMQKIN 132
              D+ E +TP Q   +    +R  +KLQ R         E++REQ  Q+    +N
Sbjct: 615147 DNVETLTPWQTYLKKKKQKRKERKLQVR---------EKIREQRLQREQGSLN 615278


>gb|DS989731.1| Cryptosporidium muris RN66 scf_1106632373451 genomic scaffold, whole
              genome shotgun sequence
          Length = 589013

 Score = 27.7 bits (60), Expect = 1.8
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -1

Query: 33     MSVFNQGLAFLQAYGWFLLFGFVAAMFVWTN 63
              +S+  Q   ++Q++ WFL+F F+A M +  N
Sbjct: 443804 ISIIFQ*KDWIQSFNWFLVFHFIAIMIMSMN 443712


>gb|DS989736.1| Cryptosporidium muris RN66 scf_1106632373433 genomic scaffold, whole
              genome shotgun sequence
          Length = 367275

 Score = 26.6 bits (57), Expect = 4.0
 Identities = 25/108 (23%), Positives = 48/108 (44%), Gaps = 7/108 (6%)
 Frame = +1

Query: 64     IEKSVKNLFGRRK---TYYDDTENMTPEQVEARSVAMERARK----KLQDRHDAAAREHE 116
              + + +KNL  + +   T Y++      + V+ R   +E  RK    KLQ+  +   +  E
Sbjct: 112456 MREKLKNLCEKYEILDTIYEEELKFVFQHVKDR-YELELKRKIEFAKLQEEMELERKIQE 112632

Query: 117    ERLREQEEQKRMQKINDHDALKAGKTQSKTSKKLDQKPDPNQATQSHI 164
               RL   +E+++ QKI         K + +   KLD+  +  +   + I
Sbjct: 112633 GRLETLQEEQQRQKILKEKNEAIAKKEHELKLKLDRDRNEKETLMNKI 112776


>gb|DS989741.1| Cryptosporidium muris RN66 scf_1106632373429 genomic scaffold, whole
             genome shotgun sequence
          Length = 105261

 Score = 26.2 bits (56), Expect = 5.3
 Identities = 16/77 (20%), Positives = 36/77 (46%)
 Frame = -2

Query: 97    MERARKKLQDRHDAAAREHEERLREQEEQKRMQKINDHDALKAGKTQSKTSKKLDQKPDP 156
             + + R+K + + +   R+  E+  E      +  +N+H      K++  T+KK+ ++   
Sbjct: 96368 INKERRKKKKKKETKKRKKREKNEEIYVI*IISSMNNHIIKSLYKSKPDTAKKILKRLKK 96189

Query: 157   NQATQSHIKRNKESKPL 173
              +   + IKRNK    +
Sbjct: 96188 KKYKLNKIKRNKNKSDI 96138


  Database: C.muris/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 9,245,251
  Number of sequences in database:  84
  
Lambda     K      H
   0.312    0.129    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,362,750
Number of Sequences: 84
Number of extensions: 14127
Number of successful extensions: 61
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 54
Number of HSP's gapped (non-prelim): 19
length of query: 204
length of database: 3,081,750
effective HSP length: 87
effective length of query: 117
effective length of database: 3,074,442
effective search space: 359709714
effective search space used: 359709714
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (25.4 bits)